Selected Publications

Academic Article

Year Title Altmetric
2021-01-01 Chapter 10: Impacts of Petroleum, Petroleum Components and Dispersants on Organisms and Populations.Oceanography.  34:136-151. 2021-01-01
2021-01-01 Considerations for scientists, especially biologists, getting involved in oil spill research.Oceanography.  34:112-123. 2021-01-01
2021-01-01 Effects of petroleum by-products and dispersants on ecosystems.Oceanography.  34:152-163. 2021-01-01
2021-01-01 Genome-wide characterization of LTR retrotransposons in the non-model deep-sea annelid Lamellibrachia luymesi.BMC Genomics.  22:466. 2021-01-01
2021-01-01 Hitching a ride: The impact of aquaculture on the genetics and distribution of the onuphid annelid Diopatra biscayensis.Ecology and Evolution..  11:6184–6194.. 2021-01-01
2021-01-01 Microbial Genomics of the Global Ocean System.Oceanography.  34:124-135. 2021-01-01
2021-01-01 New reports of Pseupodolydora (Annelida: Spionidae) from the East Coast of Florida, including the non-native species P. paucibranchiata.Biological Invasions.  10:577-588.. 2021-01-01
2021-01-01 Proximity between polyploids across South American frog genera.Journal of Biogeography.  48:991–1000. 2021-01-01
2021-01-01 Summary of Findings and Research Recommendations from the Gulf of Mexico Research Initiative.Oceanography.  34:228-239. 2021-01-01
2020-01-01 A mesopelagic ctenophore representing a new family, with notes on family-level taxonomy in Ctenophora: Vampyroctena delmarvensis gen. nov. sp. nov (Vampyroctenidae, fam. nov.).Marine Biodiversity.  50::34.. 2020-01-01
2020-01-01 Antarctic Ecosystem Responses following Ice Shelf Collapse and Iceberg Calving: Science Review and Future Research.WIRE’s Climate Change.  2021. 2020-01-01
2020-01-01 Evolutionary history of the globin gene family in annelids.Genome Biology and Evolution.  12:1719-1733.. 2020-01-01
2020-01-01 Feature Frequency Profile-based phylogenies are inaccurate.Proceedings of the National Academy of Sciences.2020-01-01
2020-01-01 Mitogenomics reveals phylogenetic relationships of Arcoida (Mollusca, Bivalvia) and multiple independent expansions in mitochondrial genome size.Molecular Phylogenetics and Evolution.  150:106857.. 2020-01-01
2020-01-01 New data from Monoplacophora and a carefully-curated dataset resolve molluscan relationships.Scientific Reports.  10::101.. 2020-01-01
2020-01-01 Patterns of Gene Evolution Following Duplications and Speciations in Vertebrates.PeerJ 8:e88132020-01-01
2020-01-01 Phylogenomic analyses reveal a Paleozoic radiation and support a fresh water origin for clitellate annelids.Zoologica Scripta.  49:614–640.. 2020-01-01
2020-01-01 The mitochondrial genome of the bone-eating worm Osedax rubiplumus (Annelida, Siboglinidae).Mitochondrial DNA Part B: Resources.  5:2267-2268.. 2020-01-01
2020-01-01 The phylogeny of Nereididae (Annelida) based on mitochondrial genomes.Zoologica Scripta..  49::366–378.. 2020-01-01
2020-01-01 Unrecognized diversity of a scale worm, Polyeunoa laevis (Annelida: Polynoidae), that feeds on soft coral.Zoologica Scripta.  49:236-249.. 2020-01-01
2019-01-01 Conservation of brittle stars (Ophiuroidea, Echinodermata) mitochondrial genome arrangements.Molecular Phylogenetics and Evolution.  130:115-120.. 2019-01-01
2019-01-01 Diversity, distribution and phylogeny of Hesionidae (Annelida) colonizing whale falls: new species of Sirsoe and connections between ocean basins.Frontiers in Marine Biology.  6:478. 2019-01-01
2019-01-01 Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi (Siboglinidae, Annelida).BMC Biology.  17::91.. 2019-01-01
2019-01-01 Life in wood: Molecular Phylogeny of Deep-sea Wood-Boring Bivalves (Mollusca: Xylophagaidae).Journal of Molluscan Studies.  85:232-243.. 2019-01-01
2019-01-01 Mitochondrial genome of Parborlasia corrugatus (Nemertea:Lineidae).Mitochondrial DNA Part B: Resources.  4:332-334. 2019-01-01
2019-01-01 Mitogenomics reveals a novel genetic code in Hemichordata.Genome Biology and Evolution.  11:29-40.. 2019-01-01
2019-01-01 Molecular phylogeny of Caudofoveata (Mollusca) challenges traditional views of relationships.Molecular Phylogenetics and Evolution.  132:138-150.. 2019-01-01
2019-01-01 Na+/K+-ATPase gene duplications in clitellate annelids are associated with freshwater colonization.Journal of Evolutionary Biology.  32::580–591.. 2019-01-01
2019-01-01 Neotropical turtle blood flukes: Two new genus and species from the Amazon river basin with a key to genera and comments on a marine-derived parasite lineage in South America.Journal of Parasitology.  105:497-523.. 2019-01-01
2019-01-01 Newly discovered occurrences and gene tree of the extracellular globins and linker chains from the giant hexagonal bilayer hemoglobin in metazoansGenome Biology and Evolution.  11:597-612.. 2019-01-01
2019-01-01 Phylogenomics of Aplacophora (Mollusca, Aculifera) and a solenogaster without a foot.Proceedings of the Royal Society B.  286:20190115.. 2019-01-01
2019-01-01 Riverscape genetic variation, migration patterns, and morphological variation of the threatened Round Rocksnail, Leptoxis ampla.Molecular Ecology.  28:1593-1610.. 2019-01-01
2019-01-01 Sequencing Disparity in the Genomic Era. Molecular Biology and Evolution.Molecular Biology and Evolution..  36:1624–1627.. 2019-01-01
2019-01-01 Spirorchis spp. (Digenea: Schistosomatoidea) infecting map turtles (Cryptodira: Emydidae: Graptemys spp.) in southeastern North America: A new species, molecular phylogeny, and key to species.Systematic Parasitology.  96:51-64.. 2019-01-01
2018-01-01 A new species of Spirorchis MacCallum, 1918 (Digenea: Schistosomatoidea) and Spirorchis scripta Stunkard, 1923 infecting river cooter, Pseudemys concinna Le Conte, 1830Comparative Parasitology.  85:120-132.. 2018-01-01
2018-01-01 A new species of xylophylic fireworm (Annelida: Amphinomidae: Cryptonome) from deep-sea wood falls in the SW Atlantic.Deep-Sea Research I.  137:66-75.. 2018-01-01
2018-01-01 Biogeographic patterns of Antarctica and the Southern Ocean: Moving the field forward.Annual Reviews of Ecology, Evolution, and Systematics.  49:355-378. 2018-01-01
2018-01-01 Compositional Differences in the Habitat-Forming Bryozoan Communities of the Antarctic Shelf.Frontiers in Ecology and Evolution..  6::116. 2018-01-01
2018-01-01 Discovery of novel hemocyanin genes in metazoans.Biological Bulletin.  235::134-151. 2018-01-01
2018-01-01 Diversity and evolution of North Atlantic Laonice Malmgren 1867 (Spionidae, Annelida) including description of a novel species.Marine Biodiversity.  48:737-749.. 2018-01-01
2018-01-01 Endosymbiont genomes yield clues of tube worm success.ISME Journal.  12:2785-2795. 2018-01-01
2018-01-01 Inter- and intra-specific comparisons of the Mg/Ca ratio of skeletal components in a suite of Antarctic echinoderms largely south of 70 degrees latitude.Antarctic Science.  30:160-169.. 2018-01-01
2018-01-01 Meiobenthic community composition and biodiversity along a 5500 km transect of Western Antarctica: a metabarcoding analysis.Marine Ecology Progress Series.  603:47-60.. 2018-01-01
2018-01-01 Mitogenomics reveals phylogenetic relationships of caudofoveate aplacophoran molluscs.Molecular Phylogenetics and Evolution.  127:429-436.. 2018-01-01
2018-01-01 New genus and species of turtle blood fluke (Digenea: Schistosomatoidea) from the Mekong snail-eating turtle, Malayemys subtrijuga (Schlegel & Müller) (Testudines: Geoemydidae) in Vietnam, with a reassessment of related Asiatic turtle blood flukes and molecular phylogeny.Systematic Parasitology.  95:133-145.. 2018-01-01
2018-01-01 Phylogenomics offers resolution of major tunicate relationships.Molecular Phylogenetics and Evolution..  121:166-173.. 2018-01-01
2018-01-01 Population genomics of Nymphon australe Hodgson 1902 (Pycnogonida, Nymphonidae) in the Western Antarctic.Biological Bulletin.  234:180-191.. 2018-01-01
2018-01-01 Sediment characteristics drive bacterial and archaeal community structure in surface sediments from the northern Gulf of Mexico.Microbial Ecology..  76:941-953.. 2018-01-01
2017-01-01 Broad phylogenetic occurrence of the oxygen-binding hemerythrinsbilaterians Genome Biology and Evolution.  9:2580–2591.. 2017-01-01
2017-01-01 Crossing the divide: Admixture across the Antarctic Polar Front revealed by the brittle star Astrotoma agassizii.Biological Bulletin.  232:198–211.. 2017-01-01
2017-01-01 Ctenophore relationships and their placement as the sister group to all other animals.Nature Ecology & Evolution.  1:1737–1746.. 2017-01-01
2017-01-01 Discovery and evolution of novel hemerythrin genes in annelid worms.BMC Evolutionary Biology..  17:85.. 2017-01-01
2017-01-01 Emendation and new species of Hapalorhynchus Stunkard, 1922 (Digenea: Schistosomatoidea) from musk turtles (Kinosternidae: Sternotherus) in Alabama and Florida rivers.Parasitology International.  66:748-760.. 2017-01-01
2017-01-01 Geographic structure in the Southern Ocean circumpolar brittle star Ophionotus victoriae (Ophiuridae) revealed from mtDNA and single- nucleotide polymorphism data.Ecology & Evolution.  7:475-485.. 2017-01-01
2017-01-01 Mitochondrial Genome of Dinophilus gyrociliatus (Annelida:Dinophilidae).Mitochondrial DNA Part B: Resources.  2:831-832.. 2017-01-01
2017-01-01 Molecular clocks indicate diversification of coleoid cephalopods during the Mesozoic Marine Revolution.Proceedings of the Royal Society B.  284:20162818.. 2017-01-01
2017-01-01 Multiple introns in a deep-sea Annelid mitochondrial genome.Scientific Reports.  7:4295.. 2017-01-01
2017-01-01 Phylogenomic analyses of Crassiclitellata support major Northern and Southern Hemisphere clades and a Pangean origin for earthworms.BMC Evolutionary Biology..  17:123. 2017-01-01
2017-01-01 Phylogenomics of Lophotrochozoa with consideration of systematic error.Systematic Biology.  66:256-282.. 2017-01-01
2017-01-01 Phylogenomics of tubeworms (Siboglinidae, Annelida) and comparative performance of reconstruction methods.Zoologica Scripta.  46:200-213.. 2017-01-01
2017-01-01 Spatial and temporal variation of intertidal nematodes in the Northern Gulf of Mexico after the Deepwater Horizon oil spill.Marine Environmental Research.  130:200-212.. 2017-01-01
2017-01-01 Toll-like receptor pathway evolution in deuterostomes.Proceedings of the National Academy of Sciences.  114:7055-7060.. 2017-01-01
2017-01-01 Two new species of Elopicola (Digenea: Aporocotylidae) from Hawaiian ladyfish, Elops hawaiensis (South China Sea) and Atlantic tarpon, Megalops atlanticus (Gulf of Mexico) with a comment on monophyly of elopomorph blood flukes.Parasitology International.  66:305-318.. 2017-01-01
2017-01-01 Who let the CAT out of the bag? Accurately dealing with substitution heterogeneity in phylogenomics.Systematic Biology.  66:232-255.. 2017-01-01
2016-01-01 Biogeochemical and microbial variation across 5500 km of Antarctic surface sediment implicates organic matter as a driver of benthic community structure.Frontiers in Microbiology.  7:284. 2016-01-01
2016-01-01 Blood flukes of Asiatic softshell turtles: revision of Coeuritrema Mehra 1933 (Digenea: Schistosomatoidea) and a new species infecting Chinese softshell turtles, Pelodiscus sinensis, (Trionychidae) from the Da Rang River, Vietnam.Folia Parasitologica.  63. 2016-01-01
2016-01-01 Diversity within the sea spider genus Pallenopsis (Pycnogonida: Chelicerata) in the Western Antarctic.Polar Biology.  39:677-688.. 2016-01-01
2016-01-01 Evolution of Sulfur Binding in Hemoglobin in Siboglinidae (Annelida) with Special Reference to Bone Eating Worms, Osedax.Journal of Molecular Evolution.  82:219-229.. 2016-01-01
2016-01-01 Genetic assessment of meiobenthic community composition and spatial distribution in coastal sediments along northern Gulf of Mexico.Marine Environmental Research.  119:166-175.. 2016-01-01
2016-01-01 Genome size estimates for Aplacophora, Polyplacophora, and Scaphopoda: Small solenogasters and sizeable scaphopods.Journal of Molluscan Studies.  82:216-219.. 2016-01-01
2016-01-01 How our view of animal phylogeny was reshaped by molecular approaches: Lessons learned.Organisms, Diversity and Evolution.  16:319-328.. 2016-01-01
2016-01-01 Metabarcoding reveals environmental factors influencing spatio-temporal variation in pelagic micro-eukaryotes.Molecular Ecology.  25:3593–3604.. 2016-01-01
2016-01-01 Methodological Misconceptions.Nature.  529:286-287.. 2016-01-01
2016-01-01 Miscues misplace sponges.Proceedings of the National Academy of Sciences.  113:E946-E947.. 2016-01-01
2016-01-01 Monoplacophoran mitochondrial genomes: convergent gene arrangements and little phylogenetic signal.BMC Evolutionary Biology..  16:274.. 2016-01-01
2016-01-01 New species of Spirorchis MacCallum, 1918 (Digenea: Schistosomatoidea) and Spirorchis cf. scripta from chicken turtle, Deirochelys reticularia, (Emydidae), with an emendation and molecular phylogeny of Spirorchis.Folia Parasitologica.  63. 2016-01-01
2016-01-01 The Global Diversity of the Hemichordata.PLOS One 11:.  e0162564. 2016-01-01
2015-01-01 Employing phylogenomics to resolve basal animal phylogeny.Integrative and Comparative Biology.  55:1084–1095.. 2015-01-01
2015-01-01 Error, signal, and the placement of Ctenophora sister to all other animals.Proceedings of the National Academy of Sciences.  112:5773-5778.. 2015-01-01
2015-01-01 Meiofaunal community analysis by high-throughput sequencing: Comparison of extraction, quality filtering, and clustering methods.Marine Genomics.  23:67-75.. 2015-01-01
2015-01-01 Mitogenomics reveals phylogeny and dramatic size variations of control regions in the deep-sea family Siboglinidae (Annelida).Molecular Phylogenetics and Evolution.  85:221-229.. 2015-01-01
2015-01-01 Opsin evolution in the Ambulacraria.Marine Genomics.  24:177-183. 2015-01-01
2015-01-01 Reconstruction of cyclooxygenase evolution in animals suggests variable, lineage-specific prostaglandin synthesis pathways.Journal of Molecular Evolution.  80:193-208.. 2015-01-01
2015-01-01 Regional differentiation and extensive hybridisation between mitochondrial clades of the Southern Ocean giant sea spider Colossendeis megalonyx.Royal Society Open Science.  2:140424.. 2015-01-01
2015-01-01 The ctenophore lineage is older then sponges? That cannot be right! Or can it?Journal of Experimental Biology.  218:592-597. 2015-01-01
2015-01-01 The evolution of annelids reveals two adaptive routes to the interstitial realm.Current Biology.  25:1993-1999.. 2015-01-01
2014-01-01 Chapter One – Diversity and ancestry of flatworms infecting blood of non-tetrapod craniates “fishes”.Advances in Parasitology.  85:1-64.. 2014-01-01
2014-01-01 Depth-dependent gene flow in Gulf of Mexico cold seep Lamellibrachia tubeworms.Hydrobiologica.  736:139-154. 2014-01-01
2014-01-01 High-throughput sequencing characterization of intertidal meiofaunal communities in northern Gulf of Mexico (Dauphin Island and Mobile Bay, Alabama).Biological Bulletin.  227:161-174.. 2014-01-01
2014-01-01 Illuminating the base of the annelid tree using transcriptomics.Molecular Biology and Evolution.  31:1391-1401.. 2014-01-01
2014-01-01 Nemertean toxin genes revealed through transcriptome sequencing.Genome Biology and Evolution.  6:3314-3325.. 2014-01-01
2014-01-01 Phylogenomic resolution of the hemichordate and echinoderm clade.Current Biology.  24:2827-2832.. 2014-01-01
2014-01-01 Reconciling taxonomy and phylogeny in the bristleworm family Eunicidae (polychaete, Annelida).Zoologica Scripta.  43:79-100.. 2014-01-01
2014-01-01 Repurposed transcriptomic data facilitate discovery of innate immunity Toll-Like Receptor (TLRs) genes across Lophotrochozoa.Biological Bulletin.  227:201-209. 2014-01-01
2014-01-01 The Ctenophore Genome and the Emergence of Neural Systems.Nature.  510:109-114.. 2014-01-01


Year Title Altmetric
2020-01-01 Bilateria..  CRC Press.. 475-477. 2020-01-01
2020-01-01 Deuterostomia..  CRC Press.. 607-610. 2020-01-01
2020-01-01 Ecdysozoa..  CRC Press.. 555-556. 2020-01-01
2020-01-01 Lophotrochozoa..  CRC Press.. 485-488. 2020-01-01
2020-01-01 Metazoa..  CRC Press.. 418-419. 2020-01-01
2020-01-01 Protostomia.  CRC Press.. 479-483. 2020-01-01
2019-01-01 Enteropneusta..  De Gruyter, Berlin.. 283-311. 2019-01-01
2019-01-01 Pterobranchia..  De Gruyter, Berlin.. 267-282. 2019-01-01


Full Name

  • Kenneth M Halanych