Selected Publications
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Academic Article
- Chapter 10: Impacts of Petroleum, Petroleum Components and Dispersants on Organisms and Populations.. Oceanography. 34:136-151. 2021-01-01
- Considerations for scientists, especially biologists, getting involved in oil spill research.. Oceanography. 34:112-123. 2021-01-01
- Effects of petroleum by-products and dispersants on ecosystems.. Oceanography. 34:152-163. 2021-01-01
- Genome-wide characterization of LTR retrotransposons in the non-model deep-sea annelid Lamellibrachia luymesi.. BMC Genomics. 22:466. 2021-01-01
- Hitching a ride: The impact of aquaculture on the genetics and distribution of the onuphid annelid Diopatra biscayensis.. Ecology and Evolution.. 11:6184–6194.. 2021-01-01
- Microbial Genomics of the Global Ocean System.. Oceanography. 34:124-135. 2021-01-01
- New reports of Pseupodolydora (Annelida: Spionidae) from the East Coast of Florida, including the non-native species P. paucibranchiata.. Biological Invasions. 10:577-588.. 2021-01-01
- Proximity between polyploids across South American frog genera.. Journal of Biogeography. 48:991–1000. 2021-01-01
- Summary of Findings and Research Recommendations from the Gulf of Mexico Research Initiative.. Oceanography. 34:228-239. 2021-01-01
- A mesopelagic ctenophore representing a new family, with notes on family-level taxonomy in Ctenophora: Vampyroctena delmarvensis gen. nov. sp. nov (Vampyroctenidae, fam. nov.).. Marine Biodiversity. 50::34.. 2020-01-01
- Antarctic Ecosystem Responses following Ice Shelf Collapse and Iceberg Calving: Science Review and Future Research.. WIRE’s Climate Change. 2021. 2020-01-01
- Evolutionary history of the globin gene family in annelids.. Genome Biology and Evolution. 12:1719-1733.. 2020-01-01
- Feature Frequency Profile-based phylogenies are inaccurate.. Proceedings of the National Academy of Sciences.. 2020-01-01
- Mitogenomics reveals phylogenetic relationships of Arcoida (Mollusca, Bivalvia) and multiple independent expansions in mitochondrial genome size.. Molecular Phylogenetics and Evolution. 150:106857.. 2020-01-01
- New data from Monoplacophora and a carefully-curated dataset resolve molluscan relationships.. Scientific Reports. 10::101.. 2020-01-01
- Patterns of Gene Evolution Following Duplications and Speciations in Vertebrates.. PeerJ 8:e8813. 2020-01-01
- Phylogenomic analyses reveal a Paleozoic radiation and support a fresh water origin for clitellate annelids.. Zoologica Scripta. 49:614–640.. 2020-01-01
- The mitochondrial genome of the bone-eating worm Osedax rubiplumus (Annelida, Siboglinidae).. Mitochondrial DNA Part B: Resources. 5:2267-2268.. 2020-01-01
- The phylogeny of Nereididae (Annelida) based on mitochondrial genomes.. Zoologica Scripta.. 49::366–378.. 2020-01-01
- Unrecognized diversity of a scale worm, Polyeunoa laevis (Annelida: Polynoidae), that feeds on soft coral.. Zoologica Scripta. 49:236-249.. 2020-01-01
- Conservation of brittle stars (Ophiuroidea, Echinodermata) mitochondrial genome arrangements.. Molecular Phylogenetics and Evolution. 130:115-120.. 2019-01-01
- Diversity, distribution and phylogeny of Hesionidae (Annelida) colonizing whale falls: new species of Sirsoe and connections between ocean basins.. Frontiers in Marine Biology. 6:478. 2019-01-01
- Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi (Siboglinidae, Annelida).. BMC Biology. 17::91.. 2019-01-01
- Life in wood: Molecular Phylogeny of Deep-sea Wood-Boring Bivalves (Mollusca: Xylophagaidae).. Journal of Molluscan Studies. 85:232-243.. 2019-01-01
- Mitochondrial genome of Parborlasia corrugatus (Nemertea:Lineidae).. Mitochondrial DNA Part B: Resources. 4:332-334. 2019-01-01
- Mitogenomics reveals a novel genetic code in Hemichordata.. Genome Biology and Evolution. 11:29-40.. 2019-01-01
- Molecular phylogeny of Caudofoveata (Mollusca) challenges traditional views of relationships.. Molecular Phylogenetics and Evolution. 132:138-150.. 2019-01-01
- Na+/K+-ATPase gene duplications in clitellate annelids are associated with freshwater colonization.. Journal of Evolutionary Biology. 32::580–591.. 2019-01-01
- Neotropical turtle blood flukes: Two new genus and species from the Amazon river basin with a key to genera and comments on a marine-derived parasite lineage in South America.. Journal of Parasitology. 105:497-523.. 2019-01-01
- Newly discovered occurrences and gene tree of the extracellular globins and linker chains from the giant hexagonal bilayer hemoglobin in metazoans. Genome Biology and Evolution. 11:597-612.. 2019-01-01
- Phylogenomics of Aplacophora (Mollusca, Aculifera) and a solenogaster without a foot.. Proceedings of the Royal Society B. 286:20190115.. 2019-01-01
- Riverscape genetic variation, migration patterns, and morphological variation of the threatened Round Rocksnail, Leptoxis ampla.. Molecular Ecology. 28:1593-1610.. 2019-01-01
- Sequencing Disparity in the Genomic Era. Molecular Biology and Evolution.. Molecular Biology and Evolution.. 36:1624–1627.. 2019-01-01
- Spirorchis spp. (Digenea: Schistosomatoidea) infecting map turtles (Cryptodira: Emydidae: Graptemys spp.) in southeastern North America: A new species, molecular phylogeny, and key to species.. Systematic Parasitology. 96:51-64.. 2019-01-01
- A new species of Spirorchis MacCallum, 1918 (Digenea: Schistosomatoidea) and Spirorchis scripta Stunkard, 1923 infecting river cooter, Pseudemys concinna Le Conte, 1830. Comparative Parasitology. 85:120-132.. 2018-01-01
- A new species of xylophylic fireworm (Annelida: Amphinomidae: Cryptonome) from deep-sea wood falls in the SW Atlantic.. Deep-Sea Research I. 137:66-75.. 2018-01-01
- Biogeographic patterns of Antarctica and the Southern Ocean: Moving the field forward.. Annual Reviews of Ecology, Evolution, and Systematics. 49:355-378. 2018-01-01
- Compositional Differences in the Habitat-Forming Bryozoan Communities of the Antarctic Shelf.. Frontiers in Ecology and Evolution.. 6::116. 2018-01-01
- Discovery of novel hemocyanin genes in metazoans.. Biological Bulletin. 235::134-151. 2018-01-01
- Diversity and evolution of North Atlantic Laonice Malmgren 1867 (Spionidae, Annelida) including description of a novel species.. Marine Biodiversity. 48:737-749.. 2018-01-01
- Endosymbiont genomes yield clues of tube worm success.. ISME Journal. 12:2785-2795. 2018-01-01
- Inter- and intra-specific comparisons of the Mg/Ca ratio of skeletal components in a suite of Antarctic echinoderms largely south of 70 degrees latitude.. Antarctic Science. 30:160-169.. 2018-01-01
- Meiobenthic community composition and biodiversity along a 5500 km transect of Western Antarctica: a metabarcoding analysis.. Marine Ecology Progress Series. 603:47-60.. 2018-01-01
- Mitogenomics reveals phylogenetic relationships of caudofoveate aplacophoran molluscs.. Molecular Phylogenetics and Evolution. 127:429-436.. 2018-01-01
- New genus and species of turtle blood fluke (Digenea: Schistosomatoidea) from the Mekong snail-eating turtle, Malayemys subtrijuga (Schlegel & Müller) (Testudines: Geoemydidae) in Vietnam, with a reassessment of related Asiatic turtle blood flukes and molecular phylogeny.. Systematic Parasitology. 95:133-145.. 2018-01-01
- Phylogenomics offers resolution of major tunicate relationships.. Molecular Phylogenetics and Evolution.. 121:166-173.. 2018-01-01
- Population genomics of Nymphon australe Hodgson 1902 (Pycnogonida, Nymphonidae) in the Western Antarctic.. Biological Bulletin. 234:180-191.. 2018-01-01
- Sediment characteristics drive bacterial and archaeal community structure in surface sediments from the northern Gulf of Mexico.. Microbial Ecology.. 76:941-953.. 2018-01-01
- Broad phylogenetic occurrence of the oxygen-binding hemerythrins. bilaterians Genome Biology and Evolution. 9:2580–2591.. 2017-01-01
- Crossing the divide: Admixture across the Antarctic Polar Front revealed by the brittle star Astrotoma agassizii.. Biological Bulletin. 232:198–211.. 2017-01-01
- Ctenophore relationships and their placement as the sister group to all other animals.. Nature Ecology & Evolution. 1:1737–1746.. 2017-01-01
- Discovery and evolution of novel hemerythrin genes in annelid worms.. BMC Evolutionary Biology.. 17:85.. 2017-01-01
- Emendation and new species of Hapalorhynchus Stunkard, 1922 (Digenea: Schistosomatoidea) from musk turtles (Kinosternidae: Sternotherus) in Alabama and Florida rivers.. Parasitology International. 66:748-760.. 2017-01-01
- Geographic structure in the Southern Ocean circumpolar brittle star Ophionotus victoriae (Ophiuridae) revealed from mtDNA and single- nucleotide polymorphism data.. Ecology & Evolution. 7:475-485.. 2017-01-01
- Mitochondrial Genome of Dinophilus gyrociliatus (Annelida:Dinophilidae).. Mitochondrial DNA Part B: Resources. 2:831-832.. 2017-01-01
- Molecular clocks indicate diversification of coleoid cephalopods during the Mesozoic Marine Revolution.. Proceedings of the Royal Society B. 284:20162818.. 2017-01-01
- Multiple introns in a deep-sea Annelid mitochondrial genome.. Scientific Reports. 7:4295.. 2017-01-01
- Phylogenomic analyses of Crassiclitellata support major Northern and Southern Hemisphere clades and a Pangean origin for earthworms.. BMC Evolutionary Biology.. 17:123. 2017-01-01
- Phylogenomics of Lophotrochozoa with consideration of systematic error.. Systematic Biology. 66:256-282.. 2017-01-01
- Phylogenomics of tubeworms (Siboglinidae, Annelida) and comparative performance of reconstruction methods.. Zoologica Scripta. 46:200-213.. 2017-01-01
- Spatial and temporal variation of intertidal nematodes in the Northern Gulf of Mexico after the Deepwater Horizon oil spill.. Marine Environmental Research. 130:200-212.. 2017-01-01
- Toll-like receptor pathway evolution in deuterostomes.. Proceedings of the National Academy of Sciences. 114:7055-7060.. 2017-01-01
- Two new species of Elopicola (Digenea: Aporocotylidae) from Hawaiian ladyfish, Elops hawaiensis (South China Sea) and Atlantic tarpon, Megalops atlanticus (Gulf of Mexico) with a comment on monophyly of elopomorph blood flukes.. Parasitology International. 66:305-318.. 2017-01-01
- Who let the CAT out of the bag? Accurately dealing with substitution heterogeneity in phylogenomics.. Systematic Biology. 66:232-255.. 2017-01-01
- Biogeochemical and microbial variation across 5500 km of Antarctic surface sediment implicates organic matter as a driver of benthic community structure.. Frontiers in Microbiology. 7:284. 2016-01-01
- Blood flukes of Asiatic softshell turtles: revision of Coeuritrema Mehra 1933 (Digenea: Schistosomatoidea) and a new species infecting Chinese softshell turtles, Pelodiscus sinensis, (Trionychidae) from the Da Rang River, Vietnam.. Folia Parasitologica. 63. 2016-01-01
- Diversity within the sea spider genus Pallenopsis (Pycnogonida: Chelicerata) in the Western Antarctic.. Polar Biology. 39:677-688.. 2016-01-01
- Evolution of Sulfur Binding in Hemoglobin in Siboglinidae (Annelida) with Special Reference to Bone Eating Worms, Osedax.. Journal of Molecular Evolution. 82:219-229.. 2016-01-01
- Genetic assessment of meiobenthic community composition and spatial distribution in coastal sediments along northern Gulf of Mexico.. Marine Environmental Research. 119:166-175.. 2016-01-01
- Genome size estimates for Aplacophora, Polyplacophora, and Scaphopoda: Small solenogasters and sizeable scaphopods.. Journal of Molluscan Studies. 82:216-219.. 2016-01-01
- How our view of animal phylogeny was reshaped by molecular approaches: Lessons learned.. Organisms, Diversity and Evolution. 16:319-328.. 2016-01-01
- Metabarcoding reveals environmental factors influencing spatio-temporal variation in pelagic micro-eukaryotes.. Molecular Ecology. 25:3593–3604.. 2016-01-01
- Methodological Misconceptions.. Nature. 529:286-287.. 2016-01-01
- Miscues misplace sponges.. Proceedings of the National Academy of Sciences. 113:E946-E947.. 2016-01-01
- Monoplacophoran mitochondrial genomes: convergent gene arrangements and little phylogenetic signal.. BMC Evolutionary Biology.. 16:274.. 2016-01-01
- New species of Spirorchis MacCallum, 1918 (Digenea: Schistosomatoidea) and Spirorchis cf. scripta from chicken turtle, Deirochelys reticularia, (Emydidae), with an emendation and molecular phylogeny of Spirorchis.. Folia Parasitologica. 63. 2016-01-01
- The Global Diversity of the Hemichordata.. PLOS One 11:. e0162564. 2016-01-01
- Employing phylogenomics to resolve basal animal phylogeny.. Integrative and Comparative Biology. 55:1084–1095.. 2015-01-01
- Error, signal, and the placement of Ctenophora sister to all other animals.. Proceedings of the National Academy of Sciences. 112:5773-5778.. 2015-01-01
- Meiofaunal community analysis by high-throughput sequencing: Comparison of extraction, quality filtering, and clustering methods.. Marine Genomics. 23:67-75.. 2015-01-01
- Mitogenomics reveals phylogeny and dramatic size variations of control regions in the deep-sea family Siboglinidae (Annelida).. Molecular Phylogenetics and Evolution. 85:221-229.. 2015-01-01
- Opsin evolution in the Ambulacraria.. Marine Genomics. 24:177-183. 2015-01-01
- Reconstruction of cyclooxygenase evolution in animals suggests variable, lineage-specific prostaglandin synthesis pathways.. Journal of Molecular Evolution. 80:193-208.. 2015-01-01
- Regional differentiation and extensive hybridisation between mitochondrial clades of the Southern Ocean giant sea spider Colossendeis megalonyx.. Royal Society Open Science. 2:140424.. 2015-01-01
- The ctenophore lineage is older then sponges? That cannot be right! Or can it?. Journal of Experimental Biology. 218:592-597. 2015-01-01
- The evolution of annelids reveals two adaptive routes to the interstitial realm.. Current Biology. 25:1993-1999.. 2015-01-01
- Chapter One – Diversity and ancestry of flatworms infecting blood of non-tetrapod craniates “fishes”.. Advances in Parasitology. 85:1-64.. 2014-01-01
- Depth-dependent gene flow in Gulf of Mexico cold seep Lamellibrachia tubeworms.. Hydrobiologica. 736:139-154. 2014-01-01
- High-throughput sequencing characterization of intertidal meiofaunal communities in northern Gulf of Mexico (Dauphin Island and Mobile Bay, Alabama).. Biological Bulletin. 227:161-174.. 2014-01-01
- Illuminating the base of the annelid tree using transcriptomics.. Molecular Biology and Evolution. 31:1391-1401.. 2014-01-01
- Nemertean toxin genes revealed through transcriptome sequencing.. Genome Biology and Evolution. 6:3314-3325.. 2014-01-01
- Phylogenomic resolution of the hemichordate and echinoderm clade.. Current Biology. 24:2827-2832.. 2014-01-01
- Reconciling taxonomy and phylogeny in the bristleworm family Eunicidae (polychaete, Annelida).. Zoologica Scripta. 43:79-100.. 2014-01-01
- Repurposed transcriptomic data facilitate discovery of innate immunity Toll-Like Receptor (TLRs) genes across Lophotrochozoa.. Biological Bulletin. 227:201-209. 2014-01-01
- The Ctenophore Genome and the Emergence of Neural Systems.. Nature. 510:109-114.. 2014-01-01
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Chapter
- Bilateria.. CRC Press.. 475-477. 2020-01-01
- Deuterostomia.. CRC Press.. 607-610. 2020-01-01
- Ecdysozoa.. CRC Press.. 555-556. 2020-01-01
- Lophotrochozoa.. CRC Press.. 485-488. 2020-01-01
- Metazoa.. CRC Press.. 418-419. 2020-01-01
- Protostomia. CRC Press.. 479-483. 2020-01-01
- Enteropneusta.. De Gruyter, Berlin.. 283-311. 2019-01-01
- Pterobranchia.. De Gruyter, Berlin.. 267-282. 2019-01-01